Molecular Structure Viewer
ChatGPT pluginVisualize and interact with molecular structures.
Molecular Structure Viewer provides a compact Select, Analyze, Compare, Related data, Style, Animate, and Export workbench over Mol*. Use one revisioned atom-level query and scene contract across the UI and your assistant to measure geometry, browse source-relative molecular companions, inspect contacts and density, compare aligned structures, style independent layers, play trajectories, restore named scenes and durable digest-bound projects, export provenance-rich results, and render publication images or editable presentation movies.
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Movement
From our daily snapshots over the last 30 days.
Rank by placement
Rank in Scientific research
12 listing changes logged · latest Oct 28: Front page. See what changed
In its category
How this plugin compares with others in the same category. Positions are counted within the category, not across the whole directory.
Scientific research11th of 38 by placement
| # | Plugin | Position | 7d |
|---|---|---|---|
| 9 | #1334 | 59places up | |
| 10 | #1373 | 16places up | |
| 11 | #1673 | 149places up | |
| 12 | #2057 | 38places down | |
| 13 | #2080 | 201places up |
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30 more on the publisher’s page.
Example prompts
- “Open RCSB 1YCR once; analyze 4 Å MDM2–p53 contacts and buried area, label p53 Phe19/Trp23/Leu26, and report methods.”
- “Open RCSB 4AKE once; add 1AKE to the same viewer, align chain A, color teal/magenta, show AP5, and report RMSD/TM-scores.”
- “Open RCSB 1EMA once; style and label its chromophore; save a versioned 1600×1200 PNG to structure-viewer/gfp.png with sidecar.”
Skills
structure-viewer
Open, query, analyze, compare, style, animate, and render local molecular structures in Codex's interactive molecular workspace powered by Mol*. Use for PDB, CIF/mmCIF and their gzip/BGZF variants, MOL/SDF/MOL2, PQR/PDBQT, GRO/XYZ, molecular objects, residue exposure, density maps, and topology-plus-trajectory workflows.
- Categories
- Sign-in
- On Install
- Capabilities
- Interactive, Read, Write
- Availability
- Available
- Version
- 0.1.96
- Keywords
- structure, pdb, cif, mmcif, mol, sdf, mol2, pqr, pdbqt, gro, xyz, molstar, protein, ligand, molecule, bioinformatics, rendering, alignment, animation, movie, png, mp4, density, trajectory, analysis
- Created
- August 6, 2026
- More info
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- Promote this plugin